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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_006680_oeaa.t1 | ||||||||
Common Name | SOVF_006680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | GATA | ||||||||
Protein Properties | Length: 270aa MW: 29436 Da PI: 7.7127 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.4 | 2.6e-20 | 151 | 185 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ Sp_006680_oeaa.t1 151 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 185 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.1E-18 | 145 | 197 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.784 | 149 | 181 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-13 | 149 | 186 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.8E-17 | 149 | 185 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.34E-13 | 150 | 182 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 151 | 176 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.4E-18 | 151 | 185 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MVGPCSSCAP FNQYCTHHSP AAANTAAYWP QQYPQYYNNN STTSYYDDEE PDYMYSSSSS 60 SSSYSSVDCT LSLGTPSTRM TTNEQTNNNN NNNSKAAPHR SSVSSFCWDL LHPNKQSSSS 120 TPKASRSNNN HHAAAAAAVS GGGDPLFVRR CANCDTTSTP LWRNGPRGPK SLCNACGIRF 180 KKEERRAAAA TTTAAAANNG GAAGMMDPHY YNGSWAHQYT PATPQKMQCY GAPNEFRFME 240 EERGGSDTGI QFLSWLTHDR PSGLVHDFTR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679730.1 | 1e-117 | PREDICTED: GATA transcription factor 19 | ||||
TrEMBL | A0A0K9S0Y4 | 0.0 | A0A0K9S0Y4_SPIOL; Uncharacterized protein | ||||
STRING | POPTR_0005s12440.1 | 5e-55 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50870.1 | 3e-38 | GATA family protein |