PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_006680_oeaa.t1
Common NameSOVF_006680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GATA
Protein Properties Length: 270aa    MW: 29436 Da    PI: 7.7127
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_006680_oeaa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.6e-20151185135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Sp_006680_oeaa.t1 151 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 185
                        ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-18145197IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.784149181IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-13149186No hitNo description
Gene3DG3DSA:3.30.50.103.8E-17149185IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.34E-13150182No hitNo description
PROSITE patternPS003440151176IPR000679Zinc finger, GATA-type
PfamPF003206.4E-18151185IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVGPCSSCAP FNQYCTHHSP AAANTAAYWP QQYPQYYNNN STTSYYDDEE PDYMYSSSSS  60
SSSYSSVDCT LSLGTPSTRM TTNEQTNNNN NNNSKAAPHR SSVSSFCWDL LHPNKQSSSS  120
TPKASRSNNN HHAAAAAAVS GGGDPLFVRR CANCDTTSTP LWRNGPRGPK SLCNACGIRF  180
KKEERRAAAA TTTAAAANNG GAAGMMDPHY YNGSWAHQYT PATPQKMQCY GAPNEFRFME  240
EERGGSDTGI QFLSWLTHDR PSGLVHDFTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679730.11e-117PREDICTED: GATA transcription factor 19
TrEMBLA0A0K9S0Y40.0A0A0K9S0Y4_SPIOL; Uncharacterized protein
STRINGPOPTR_0005s12440.15e-55(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-38GATA family protein